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Server özelliklerim
Processor Intel Xeon E3 1225v2
Cores/Threads 4 cores/ 4 threads
Frequency 3.2 GHz+
RAM 16GB DDR3
Disks 2 x 2 TB SATA
RAID Soft
Network card 1 Gbps
Bandwidth 250 Mbps

Serverde directadmin kurulu ek olarak
PHP 5.3.29 (cli) (built: Oct 19 2016 22:33:31)
Copyright (c) 1997-2014 The PHP Group
Zend Engine v2.3.0, Copyright (c) 1998-2014 Zend Technologies
Server version: Apache/2.2.31 (Unix)


# Example MySQL config file for very large systems.
#
# This is for a large system with memory of 1G-2G where the system runs mainly
# MySQL.
#
# MySQL programs look for option files in a set of
# locations which depend on the deployment platform.
# You can copy this option file to one of those
# locations. For information about these locations, see:
# http://dev.mysql.com/doc/mysql/en/option-files.html
#
# In this file, you can use all long options that a program supports.
# If you want to know which options a program supports, run the program
# with the "--help" option.

# The following options will be passed to all MySQL clients
[client]
#password	= your_password
port		= 3306
socket		= /var/lib/mysql/mysql.sock

# Here follows entries for some specific programs

# The MySQL server
[mysqld]
slow_query_log=1
slow_query_log_file=/var/log/mysql-slow.log
long_query_time=5

port		= 3306
socket		= /var/lib/mysql/mysql.sock
skip-external-locking
key_buffer_size = 384M
max_allowed_packet = 500M
table_open_cache = 512
sort_buffer_size = 2M
read_buffer_size = 2M
read_rnd_buffer_size = 8M
myisam_sort_buffer_size = 64M
thread_cache_size = 8
query_cache_size = 32M
# Try number of CPU's*2 for thread_concurrency
thread_concurrency = 8
max_connections = 500
query_cache_type = 0
tmp_table_size = 64M
max_heap_table_size =32M
performance_schema = OFF


local-infile=0

# Don't listen on a TCP/IP port at all. This can be a security enhancement,
# if all processes that need to connect to mysqld run on the same host.
# All interaction with mysqld must be made via Unix sockets or named pipes.
# Note that using this option without enabling named pipes on Windows
# (via the "enable-named-pipe" option) will render mysqld useless!
# 
#skip-networking

# Replication Master Server (default)
# binary logging is required for replication
#log-bin=mysql-bin

# required unique id between 1 and 2^32 - 1
# defaults to 1 if master-host is not set
# but will not function as a master if omitted
server-id	= 1

# Replication Slave (comment out master section to use this)
#
# To configure this host as a replication slave, you can choose between
# two methods :
#
# 1) Use the CHANGE MASTER TO command (fully described in our manual) -
#    the syntax is:
#
#    CHANGE MASTER TO MASTER_HOST=<host>, MASTER_PORT=<port>,
#    MASTER_USER=<user>, MASTER_PASSWORD=<password> ;
#
#    where you replace <host>, <user>, <password> by quoted strings and
#    <port> by the master's port number (3306 by default).
#
#    Example:
#
#    CHANGE MASTER TO MASTER_HOST='125.564.12.1', MASTER_PORT=3306,
#    MASTER_USER='joe', MASTER_PASSWORD='secret';
#
# OR
#
# 2) Set the variables below. However, in case you choose this method, then
#    start replication for the first time (even unsuccessfully, for example
#    if you mistyped the password in master-password and the slave fails to
#    connect), the slave will create a master.info file, and any later
#    change in this file to the variables' values below will be ignored and
#    overridden by the content of the master.info file, unless you shutdown
#    the slave server, delete master.info and restart the slaver server.
#    For that reason, you may want to leave the lines below untouched
#    (commented) and instead use CHANGE MASTER TO (see above)
#
# required unique id between 2 and 2^32 - 1
# (and different from the master)
# defaults to 2 if master-host is set
# but will not function as a slave if omitted
#server-id       = 2
#
# The replication master for this slave - required
#master-host     =   <hostname>
#
# The username the slave will use for authentication when connecting
# to the master - required
#master-user     =   <username>
#
# The password the slave will authenticate with when connecting to
# the master - required
#master-password =   <password>
#
# The port the master is listening on.
# optional - defaults to 3306
#master-port     =  <port>
#
# binary logging - not required for slaves, but recommended
#log-bin=mysql-bin
#
# binary logging format - mixed recommended 
#binlog_format=mixed

# Uncomment the following if you are using InnoDB tables
#innodb_data_home_dir = /var/lib/mysql
#innodb_data_file_path = ibdata1:2000M;ibdata2:10M:autoextend
#innodb_log_group_home_dir = /var/lib/mysql
# You can set .._buffer_pool_size up to 50 - 80 %
# of RAM but beware of setting memory usage too high
#innodb_buffer_pool_size = 384M
#innodb_additional_mem_pool_size = 20M
# Set .._log_file_size to 25 % of buffer pool size
#innodb_log_file_size = 100M
#innodb_log_buffer_size = 8M
#innodb_flush_log_at_trx_commit = 1
#innodb_lock_wait_timeout = 50

[mysqldump]
quick
max_allowed_packet = 16M

[mysql]
no-auto-rehash
# Remove the next comment character if you are not familiar with SQL
#safe-updates

[myisamchk]
key_buffer_size = 256M
sort_buffer_size = 256M
read_buffer = 2M
write_buffer = 2M

[mysqlhotcopy]
interactive-timeout

./mysqltuner.pl sorgusu ile çıkan sonuç

-------- Recommendations ---------------------------------------------------------------------------
General recommendations:
    Control error line(s) into /var/lib/mysql/srv.manga-tr.com.err file
    Remove Anonymous User accounts - there are 2 anonymous accounts.
    MySQL started within last 24 hours - recommendations may be inaccurate
    Configure your accounts with ip or subnets only, then update your configuration with skip-name-resolve=1
    Adjust your join queries to always utilize indexes
    When making adjustments, make tmp_table_size/max_heap_table_size equal
    Reduce your SELECT DISTINCT queries which have no LIMIT clause
    Increase table_open_cache gradually to avoid file descriptor limits
    Read this before increasing table_open_cache over 64: http://bit.ly/1mi7c4C
    Beware that open_files_limit (2500) variable
    should be greater than table_open_cache (512)
    Optimize queries and/or use InnoDB to reduce lock wait
    Performance shouldn't be activated for MySQL and MariaDB 5.5 and lower version
    Consider installing Sys schema from https://github.com/mysql/mysql-sys
Variables to adjust:
    join_buffer_size (> 128.0K, or always use indexes with joins)
    tmp_table_size (> 64M)
    max_heap_table_size (> 32M)
    table_open_cache (> 512)
    performance_schema = OFF disable PFS
    innodb_file_per_table=ON
    innodb_log_file_size * innodb_log_files_in_group should be equals to 1/4 of buffer pool size (=64M) if possible.


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